Publications (88) JUAN CARLOS ALEDO RAMOS publications

filter_list

2023

  1. Pine has two glutamine synthetase paralogs, GS1b.1 and GS1b.2, exhibiting distinct biochemical properties

    Plant Journal, Vol. 113, Núm. 6, pp. 1330-1347

  2. Proteome-Wide Structural Computations Provide Insights into Empirical Amino Acid Substitution Matrices

    International Journal of Molecular Sciences, Vol. 24, Núm. 1

2022

  1. A Census of Human Methionine-Rich Prion-like Domain-Containing Proteins

    Antioxidants, Vol. 11, Núm. 7

  2. Phylogenies from unaligned proteomes using sequence environments of amino acid residues

    Scientific Reports, Vol. 12, Núm. 1

  3. renz: An R package for the analysis of enzyme kinetic data

    BMC Bioinformatics, Vol. 23, Núm. 1

2021

  1. Enzyme kinetic parameters estimation: A tricky task?

    Biochemistry and Molecular Biology Education, Vol. 49, Núm. 4, pp. 633-638

  2. The role of methionine residues in the regulation of liquid-liquid phase separation

    Biomolecules, Vol. 11, Núm. 8

  3. ptm: an R package for the study of methionine sulfoxidation and other posttranslational modifications

    Bioinformatics, Vol. 37, Núm. 21, pp. 3979-3980

2020

  1. Combining feature engineering and feature selection to improve the prediction of methionine oxidation sites in proteins

    Neural Computing and Applications, Vol. 32, Núm. 2, pp. 323-334

  2. Susceptibility of protein methionine oxidation in response to hydrogen peroxide treatment–ex vivo versus in vitro: A computational insight

    Antioxidants, Vol. 9, Núm. 10, pp. 1-24

2019

  1. MetOSite: An integrated resource for the study of methionine residues sulfoxidation

    Bioinformatics, Vol. 35, Núm. 22, pp. 4849-4850

  2. Methionine in proteins: The Cinderella of the proteinogenic amino acids

    Protein Science, Vol. 28, Núm. 10, pp. 1785-1796

  3. Thermodynamics of Enzyme-Catalyzed Reactions

    Advances in Enzyme Technology, First Edition (Elsevier), pp. 105-135

  4. Thermodynamics of enzyme-catalyzed reactions

    Biomass, Biofuels, Biochemicals: Advances in Enzyme Technology (Elsevier), pp. 105-135

2018

  1. Multisite phosphorylation provides a reliable mechanism for making decisions in noisy environments

    FEBS Journal, Vol. 285, Núm. 20, pp. 3729-3737

2017

  1. A machine learning approach for predicting methionine oxidation sites

    BMC Bioinformatics, Vol. 18, Núm. 1

  2. Inferring Methionine Sulfoxidation and serine Phosphorylation crosstalk from Phylogenetic analyses

    BMC Evolutionary Biology, Vol. 17, Núm. 1

  3. Methionine residues around phosphorylation sites are preferentially oxidized in vivo under stress conditions

    Scientific Reports, Vol. 7

  4. Prediction of protein oxidation sites

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

2016

  1. Daniel E. Koshland Jr. Una historia con pantalones tejanos, un pingüino y mucha ciencia

    Encuentros en la Biología, Vol. 9, Núm. 161, pp. 196-199